Nathan M. Springer

Latest

• Drastic differential CRISPR-Cas9 induced mutagenesis influenced by DNA methylation and chromatin features
• Limited consequences for loss of RNA-directed DNA methylation in Setaria viridis domains rearranged methyltransferase (DRM) mutants
• Modeling chromatin state from sequence across angiosperms using recurrent convolutional neural networks
• Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes
• Genetic and epigenetic contributions to variation in transposable element expression responses to abiotic stress in maize
• Cis-regulatory elements within TEs can influence expression of nearby maize genes
• Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions
• Optimization of multiplexed CRISPR/Cas9 system for highly efficient genome editing in Setaria viridis
• Variation and inheritance of small RNAs in maize inbreds and F1 hybrids
• Population-level analysis reveals the widespread occurrence and phenotypic consequence of DNA methylation variation not tagged by genetic variation in maize
• Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize
• Monitoring the interplay between transposable element families and DNA methylation in maize
• Hybrid decay: a transgenerational epigenetic decline in vigor and viability triggered in backcross populations of teosinte with maize
• Opportunities to Use DNA Methylation to Distil Functional Elements in Large Crop Genomes
• Heritable Epigenomic Changes to the Maize Methylome Resulting from Tissue Culture
• Targeted epigenomic changes to the maize methylome resulting from tissue culture
• The Maize Methylome