Genome‐wide loss of CHH methylation with limited transcriptome changes in Setaria viridis domains rearranged methyltransferase (DRM) mutants
Andrew Read,
Trevor Weiss,
Peter A Crisp,
Zhikai Liang,
Jaclyn Noshay,
Claire C Menard,
Chunfang Wang,
Meredith Song,
Candice N Hirsch,
Nathan M Springer,
Feng Zhang
Limited consequences for loss of RNA-directed DNA methylation in Setaria viridis domains rearranged methyltransferase (DRM) mutants
Andrew Read,
Trevor Weiss,
Peter A. Crisp,
Zhikai Liang,
Jaclyn Noshay,
Claire C. Menard,
Chunfang Wang,
Meredith Song,
Candice N. Hirsch,
Nathan M. Springer,
Feng Zhang
Prediction of conserved and variable heat and cold stress response in maize using cis-regulatory information
Peng Zhou,
Tara A Enders,
Zachary A Myers,
Erika Magnusson,
Peter A Crisp,
Jaclyn M Noshay,
Fabio Gomez-Cano,
Zhikai Liang,
Erich Grotewold,
Kathleen Greenham,
Nathan M Springer
Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons
Jaclyn M Noshay,
Alexandre P Marand,
Sarah N Anderson,
Peng Zhou,
Maria Katherine Mejia Guerra,
Zefu Lu,
Christine H O’Connor,
Peter Crisp,
Candice N Hirsch,
Robert J Schmitz,
Nathan M Springer
Applying cis-regulatory codes to predict conserved and variable heat and cold stress response in maize
Peng Zhou,
Tara A. Enders,
Zachary A. Myers,
Erika Magnusson,
Peter Crisp,
Jaclyn Noshay,
Fabio Gomez-Cano,
Zhikai Liang,
Erich Grotewold,
Kathleen Greenham,
Nathan Springer
Cis-regulatory elements within TEs can influence expression of nearby maize genes
Jaclyn Noshay,
Alexandre P. Marand,
Sarah N. Anderson,
Peng Zhou,
Maria Katherine Mejia Guerra,
Zefu Lu,
Christine O’Connor,
Peter Crisp,
Candice N. Hirsch,
Robert J. Schmitz,
Nathan M. Springer
Variation and inheritance of small RNAs in maize inbreds and F1 hybrids
Peter Crisp,
Reza Hammond,
Peng Zhou,
Brieanne Vaillancourt,
Anna M. Lipzen,
Chris Daum,
Kerrie W. Barry,
Natalia de Leon,
C. Robin Buell,
Shawn M. Kaeppler,
Blake C. Meyers,
Candice Hirsch,
Nathan M. Springer
Optimization of multiplexed CRISPR/Cas9 system for highly efficient genome editing in Setaria viridis
Trevor Weiss,
Chunfang Wang,
Xiaojun Kang,
Hui Zhao,
Maria Elena Gamo,
Colby G. Starker,
Peter Crisp,
Peng Zhou,
Nathan M. Springer,
Daniel F. Voytas,
Feng Zhang
Molecular and physiological responses during thermal acclimation of leaf photosynthesis and respiration in rice
Fatimah Azzahra Ahmad Rashid,
Peter Crisp,
You Zhang,
Oliver Berkowitz,
Barry J. Pogson,
David A. Day,
Josette Masle,
Roderick C. Dewar,
James Whelan,
Owen K. Atkin,
Andrew P. Scafaro
Population-level analysis reveals the widespread occurrence and phenotypic consequence of DNA methylation variation not tagged by genetic variation in maize
Jing Xu,
Guo Chen,
Peter J. Hermanson,
Qiang Xu,
Changshuo Sun,
Wenqing Chen,
Qiuxin Kan,
Minqi Li,
Peter Crisp,
Jianbing Yan,
Lin Li,
Nathan M. Springer,
Qing Li
Monitoring the interplay between transposable element families and DNA methylation in maize
Jaclyn M. Noshay,
Sarah N. Anderson,
Peng Zhou,
Lexiang Ji,
William Ricci,
Zefu Lu,
Michelle C. Stitzer,
Peter Crisp,
Candice N. Hirsch,
Xiaoyu Zhang,
Robert J. Schmitz,
Nathan M. Springer
Hybrid Decay: A Transgenerational Epigenetic Decline in Vigor and Viability Triggered in Backcross Populations of Teosinte with Maize
Wei Xue,
Sarah N. Anderson,
Xufeng Wang,
Liyan Yang,
Peter Crisp,
Qing Li,
Jaclyn Noshay,
Patrice S. Albert,
James A. Birchler,
Paul Bilinski,
Michelle C. Stitzer,
Jeffrey Ross-Ibarra,
Sherry Flint-Garcia,
Xuemei Chen,
Nathan M. Springer,
John F. Doebley
Hybrid decay: a transgenerational epigenetic decline in vigor and viability triggered in backcross populations of teosinte with maize
Wei Xue,
Sarah N. Anderson,
Xufeng Wang,
Liyan Yang,
Peter Crisp,
Qing Li,
Jaclyn Noshay,
Patrice S. Albert,
James A. Birchler,
Paul Bilinski,
Michelle C. Stitzer,
Jeffrey Ross-Ibarra,
Sherry Flint-Garcia,
Xuemei Chen,
Nathan M. Springer,
John F. Doebley
A chloroplast retrograde signal, 3’-phosphoadenosine 5’-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination
Wannarat Pornsiriwong,
Gonzalo M. Estavillo,
Kai Xun Chan,
Estee E. Tee,
Diep Ganguly,
Peter Crisp,
Su Yin Phua,
Chenchen Zhao,
Jiaen Qiu,
Jiyoung Park,
Miing Tiem Yong,
Nazia Nisar,
Arun Kumar Yadav,
Benjamin Schwessinger,
John Rathjen,
Christopher I. Cazzonelli,
Philippa B. Wilson,
Matthew Gilliham,
Zhong-Hua Chen,
Barry J. Pogson
Rapid recovery gene downregulation during excess-light stress and recovery in Arabidopsis
Peter Crisp,
Diep Ganguly,
Aaron B. Smith,
Kevin D. Murray,
Gonzalo M. Estavillo,
Iain R. Searle,
Ethan Ford,
Ozren Bogdanović,
Ryan Lister,
Justin O. Borevitz,
Steven R. Eichten,
Barry J. Pogson
Evidence for a SAL1-PAP Chloroplast Retrograde Pathway That Functions in Drought and High Light Signaling in Arabidopsis
Gonzalo M. Estavillo,
Peter Crisp,
Wannarat Pornsiriwong,
Markus Wirtz,
Derek Collinge,
Chris Carrie,
Estelle Giraud,
James Whelan,
Pascale David,
Hélène Javot,
Charles Brearley,
Rüdiger Hell,
Elena Marin,
Barry J. Pogson
A Novel fry1 Allele Reveals the Existence of a Mutant Phenotype Unrelated to 5′-textgreater3′ Exoribonuclease (XRN) Activities in Arabidopsis thaliana Roots
Judith Hirsch,
Julie Misson,
Peter Crisp,
Pascale David,
Vincent Bayle,
Gonzalo M. Estavillo,
Hélène Javot,
Serge Chiarenza,
Allison C. Mallory,
Alexis Maizel,
Marie Declerck,
Barry J. Pogson,
Hervé Vaucheret,
Martin Crespi,
Thierry Desnos,
Marie-Christine Thibaud,
Laurent Nussaume,
Elena Marin